Payroll pitfalls: Stay on top of HR compliance


Payroll compliance is a must-have for any business. Payroll compliance is more than just ensuring that paychecks are issued on time. It also includes checks for accurate tax data, proper record-keeping, and compliance with ever-changing regulations. A wrong move can lead to expensive consequences, disgruntled employees, and a tarnished reputation.


This guide will cover the basic steps that HR professionals and payroll departments can take to tighten their compliance strategy. From ensuring employee and contractor tax data is accurate to improving internal processes and leveraging useful capabilities such as TIN Matching to improve accuracy.


Why Payroll Compliance is Important


Payroll compliance refers to the rules and procedures that employers must follow in order to pay employees. Tax withholding, reporting and filing deadlines are all part of the payroll compliance. Even minor mistakes, such as putting in the wrong tax ID or name on a form, can lead to an auditor’s report and fines.


Getting your payroll practices correct, proactive and fully compliant to IRS requirements are essential for the health and long-term success of your business.


Payroll Pitfalls that Hurt HR Compliance


Before enhancing your compliance strategy, it is important to identify the most common payroll mistakes that businesses make:


1. Misclassification of Employees and Contractors


Misclassification of workers as independent contractors when they should be considered employees is a big problem (or vice versa). If the IRS catches this, it can lead to missed tax withholdings and unpaid benefits.


2. Tax Information that is Inaccurate, Unverified or Not Verified


IRS penalties can result if SSNs are not entered correctly or if names, TINs, or SSNs do not match. These mistakes are very common, and they occur when data is not verified at the time of hiring or signing a contract.


3. Missing Payroll Deadlines


Late deposits and filings can make your compliance record look bad, and you may be subject to penalties and interest. Keep track of all deadlines.


4. Poor Record-Keeping


A common mistake in compliance is not keeping payroll documents, tax forms, and timesheets for the appropriate amount of time. When it comes to employee disputes or audits, this can be a major problem.


5. Failure to stay up to date with regulations


The laws at the federal, state and local level are constantly changing. What was legal six months ago may not be legal today. HR teams must stay informed about changes to payroll practices, especially the minimum wage, tax reporting, and benefits.


Verifying tax information


Payroll compliance is based on accuracy of tax information. This begins by verifying employee and contractor data. When an employee is hired, their tax information will be used to calculate their paychecks and reports.


This is what the process should look like.


Confirming legal names and TINs


Verify that the name, Taxpayer Identification number (SSN or EIN), and IRS records match. A simple typo can create a mismatch.


Verifying Work Authorization and Classification


Verify that the worker is legally eligible to work in the U.S. and ensure they are classified correctly as a W-2 or 1099 employee.


Forms for Requesting and Examining Information


Complete and save the W-4 form (for employees) or W-9 form (for independent contractors). These forms contain vital data for tax reporting and withholding.


Checking Red Flags


Before running payroll, investigate if something seems off or suspicious. For example, a placeholder TIN or names that don’t match documentation or addresses that are inconsistent.


Why accurate TINs matter


Taxpayer Identification Numbers are used by the IRS to track tax obligations, and reconcile income reports with individuals or companies. You may receive the following if the number on the form does not match the name in the IRS records:


  • Rejected Filings (such 1099s)

  • IRS back withholding requirements

  • Penalties and fines for providing incorrect information

  • Delays or audits


By verifying the information before filing, you can avoid a cascade issue.


How TIN matching helps


Before submitting their information returns, businesses and payers are able to use the IRS’ “TIN Matching Service” in order to verify that a name and TIN match. This is a fast and reliable method to verify vendor and contractor information and to prevent any mismatches which could lead to IRS penalties and letters.

Third-party tools are often used to simplify the verification process, such as EINsearch’s TIN Matching Service. These tools enable HR and payroll professionals to compare EINs to IRS records, allowing them to be more confident in the data they collect.


Best practices to strengthen HR Payroll Compliance


Here are some tips to help you create a payroll system that is compliant with all laws:


1. Implement a thorough onboarding process


Use checklists to ensure that all new employees and contractors provide valid identification, W-4 or W-9 forms and information about direct deposit. Contractors must sign agreements that specify payment terms and classification.


2. Schedule regular tax ID verifications


You can’t rely on just one verification. Plan reminders for checking periodically whether employee and contractor details are up-to-date — especially before sending annual tax returns like W-2s or 10-99s.


3. Payroll software with compliance features


Modern payroll platforms are able to calculate taxes automatically and generate reports. They can also alert you to any red flags of non-compliance. Choose a payroll solution that integrates with HR systems and meets federal and state requirements.


4. Train HR staff on a regular basis


The laws and regulations change constantly, so it is important to retrain. Update your HR and payroll team on classification rules, wage laws and reporting requirements. This will help to avoid costly mistakes and keep everyone in the loop.


Staying ahead of Regulation Changes


The biggest obstacle to HR compliance may be the need to adapt to changing legal requirements. Businesses must be on the lookout for changes in federal contractor classification and local tax reporting opportunities.


To keep ahead:


  • Subscribe to IRS and Department of Labor Newsletters

  • Get updates on payroll and HR systems

  • Consult legal or tax professionals when major changes are made


By being proactive, rather than reactive, your business can better control its compliance and avoid surprises.


Final Thoughts


Accuracy and planning are key to HR compliance. This is especially true when it comes payroll. Verifying the tax information of every new employee or contractor will ensure accurate filings, timely payment, and less headaches from the IRS.


While no system is completely failsafe, developing good habits around verification, technology, and training will help your business stay compliant and ahead of the game.

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